Biophysics, Computational Sciences

• ####################

• ##########################

Articles Published

• Emon, S. et al. (2025) Molecular Dynamics of Electroporation and Quantitative Analysis of Molecular Transport. Journal of Biological Physics. https://doi.org/10.1007/s10867-025-09682-w 

• Asaduzzaman M., Emon, S., et al. (2025) Molecular transport through nano-sized multipores of lipid vesicles: a COMSOL simulation study. European Biophysics Journal. https://doi.org/10.1007/s00249-025-01745-z 

• Asaduzzaman, M., Das, S., Saha, S., Emon, S., & Alam, M. K. (2024). Study of Molecular Transport Through Nano-Sized Asymmetric Multipores in the Membrane of a Giant Unilamellar Vesicle Using COMSOL Simulation. Bangladesh Journal of Physics, 31(2), 53–64. https://doi.org/10.3329/bjphy.v31i2.79519  

• Emon, S., et al. Optimizing Electroporation via Pulse Modulation: A Molecular Dynamics Study. European Biophysics Journal.

• Alam, M.K., Emon, S., Takaba, H. Understanding Decomposition Mechanisms of Li₂O₂ in Cathode of Li-O₂ Battery with First-Principles Molecular Dynamics. Physical Chemistry Research. 

• Rahman, T., Asaduzzaman, M., Emon, S. et al. Study on Molecular Transport by Varying the Size of the Nanopore in the Membrane of GUV Using Simulation. Applied Biological Research. 

Oral Presentations

• Emon, S., et al. “Molecular Dynamic Simulation of Hydrophilic Pore Stabilization During Electroporation.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• Sakib, S., Emon, S., et al. “Unraveling Amyloid Beta Clearance Mechanisms by ABCG2 Efflux pump in Alzheimer’s Disease using Molecular Dynamics Simulation.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• Asaduzaman, M., Emon, S., et al. “Molecular Transport through Multi-Nanopore Systems in Giant Unilamellar Vesicles: A COMSOL Simulation Study.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• Emon, S., et al. “Simulation and Quantitative Analysis of Biomacromolecules Transport through Multi-Channel Nanopores in an Electroporated Giant Unilamellar Vesicle.” National Conference on Physics for 21st Century, Physics Discipline, Khulna University, May 18, 2024.

• Anna, S. S., Saha, S., Emon, S., et al. “Computational Approach of Drug Delivery through Multiple Nanopores in a Multivesicular Vesicle.” International Conference on Physics-2024, Bangladesh Physical Society, Atomic Energy Center, May 9-11, 2024.

Poster Presentations

• Emon, S., et al. “Investigating Pore Stabilization Dynamics During Electroporation via Molecular Dynamics Simulations.” Bridging the Theoretical and Experimental Biophysicists in Bangladesh, Biophysical Society Networking Event, University of Barishal, April 17, 2025.

• Das, P., Saha, S., Emon, S., et al. “Electroporation Effects on Lipid Bilayers in MDA-MB-231 (TNBC) Cells: A Molecular Dynamics Study.” Bridging the Theoretical and Experimental Biophysicists in Bangladesh, Biophysical Society Networking Event, University of Barishal, April 17, 2025.

• Amin, A., Emon, S., et al. “Enhancing Molecular Transport through Optimized Electroporation and Controlled Pore Stabilization.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• Bardhan, N., Emon, S., et al. “Molecular Dynamics of Nanopore Formation and Quantitative Analysis of Molecular Transport in Lipid Bilayers Under Electroporation.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• Anna, S. S., Saha, S., Emon, S., et al. “Intracellular Delivery of Biomolecules through Multiple Nanopores in an Electroporated Multivesicular Vesicle.” National Conference on Physics-2025, Bangladesh Physical Society, University of Rajshahi, February 6-7, 2025.

• ##########################